Result for the search of Gene Name/NCBI ID(s): 'CCDC40'

Total of fusion sequences: 5 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	BC058288 ANNOTATION OF CHIMERA FUSION GenBank ID: BC058288 FASTA UniProtKB: Q4G0X9 Coiled-coil domain-containing protein 40 Fusion Gene(s): CCDC40 KIAA1640 Head Gene (1) Alignment: CCDC40 | OMIM: 613799 Tail Gene (2) Alignment: COQ5 | OMIM: 616359 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55036 17 + 80036658 80066770 10 0 protein-coding 84274 12 - 120526703 120526733 0 0 protein-coding 2050 hg38 Updated: 2019-04-13 Owner: ChiTaRS	CCDC40 I3L292 I3L2X6 I3L3G6 I3L477 Q4G0X9 XM_011524963.3	5..2014 99.9%	+ 17	COQ5 B4DP72 F8VP53 F8VVD5 F8VVW7 F8VVX6 Q5HYK3 XM_024449224.1	2015..2045 95.2%	- 12	1 0 0	intron-intron
2 Homo Sapiens	AA641161 ANNOTATION OF CHIMERA FUSION GenBank ID: AA641161 FASTA Head Gene (1) Alignment: CCDC40 | OMIM: 613799 Tail Gene (2) Alignment: PLEC | OMIM: 601282 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55036 17 + 80075276 80075627 0 0 protein-coding 5339 8 + 143915153 143915433 1 1 oncogene, protein-coding 300 hg38 Updated: 2019-04-13 Owner: ChiTaRS	CCDC40 I3L292 I3L2X6 I3L3G6 I3L477 Q4G0X9 XM_011524963.3	1..192 96.1%	+ 17	PLEC D3DWL0 E9PIA2 E9PKG0 E9PMV1 E9PQ28 H0YDN1 Q15149 Q8WXV5 Q8WXV6 XM_006716588.3	23..300 99.0%	+ 8	1 0 0	intron-exon
3 Homo Sapiens	BF525976 ANNOTATION OF CHIMERA FUSION GenBank ID: BF525976 FASTA Head Gene (1) Alignment: PLEC | OMIM: 601282 Tail Gene (2) Alignment: CCDC40 | OMIM: 613799 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5339 8 - 143915153 143915470 1 1 oncogene, protein-coding 55036 17 - 80075275 80075627 10 0 protein-coding 342 hg38 Updated: 2019-01-10 Owner: ChiTaRS	PLEC D3DWL0 E9PIA2 E9PKG0 E9PMV1 E9PQ28 H0YDN1 Q15149 Q8WXV5 Q8WXV6 XM_006716588.3	1..317 99.7%	- 8	CCDC40 I3L292 I3L2X6 I3L3G6 I3L477 Q4G0X9 NM_017950.3	146..342 96.6%	- 17	1 0 0	exon-intron
4 Homo Sapiens	AZ693637 ANNOTATION OF CHIMERA FUSION GenBank ID: AZ693637 FASTA Head Gene (1) Alignment: CCDC40 | OMIM: 613799 Tail Gene (2) Alignment: GTF2H2 | OMIM: 601748 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55036 17 + 80077172 80077205 1 0 protein-coding 2966 5 - 598439 598466 1 0 protein-coding 96 hg38 Updated: 2018-07-03 Owner: ChiTaRS	CCDC40 I3L292 I3L2X6 I3L3G6 I3L477 Q4G0X9	1..34 97.1%	+ 17	GTF2H2 D6RAW1 D6RGC9 Q13888 R4GMS9 R4GMV2	16..43 96.5%	- 5	1 0 0	intron-intron
5 Homo Sapiens	AV686705 ANNOTATION OF CHIMERA FUSION GenBank ID: AV686705 FASTA Head Gene (1) Alignment: WDR91 | OMIM: 616303 Tail Gene (2) Alignment: CCDC40 | OMIM: 613799 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 29062 7 - 135184323 135184931 1 1 protein-coding 55036 17 + 80095868 80095887 2 0 protein-coding 653 hg38 Updated: 2019-02-07 Owner: ChiTaRS	WDR91 A0A024R751 A4D1P6 C9J1X0 XM_011516083.3	1..606 97.1%	- 7	CCDC40 I3L292 I3L2X6 I3L3G6 I3L477 Q4G0X9 NM_017950.3	603..622 100.0%	+ 17	1 0 0	exon-intron

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