Result for the search of Gene Name/NCBI ID(s): 'C11orf54'

Total of fusion sequences: 2 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB BX481788 ANNOTATION OF CHIMERA FUSION GenBank ID: BX481788 FASTA Head Gene (1) Alignment: C11orf54 | OMIM: 615810 Tail Gene (2) Alignment: TAF1D | OMIM: 612823 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 28970 11 - 93748897 93749161 3 0 protein-coding 79101 11 - 93735018 93735433 6 0 protein-coding 537 hg38 Updated: 2019-02-01 Owner: ChiTaRS	C11orf54 A0A024R396 A0A024R3B0 A0A087WT99 E9PIP1 E9PJU8 E9PLB3 E9PLC5 E9PPB5 E9PQS1 E9PR95 E9PSC3 Q9H0W9 NM_001351989.1	10..121 99.5%	- 11	TAF1D A0A024R3A9 A0A1D5RMT6 E9PKU8 E9PM59 H0Y3L3 H0YCH2 H0YG36 H0YH71 L8ECK2 Q9H5J8 NR_146091.1	122..537 99.5%	- 11	1 0 0	intron-intron
2 Homo Sapiens	CA311300 ANNOTATION OF CHIMERA FUSION GenBank ID: CA311300 FASTA Head Gene (1) Alignment: C11orf54 | OMIM: 615810 Tail Gene (2) Alignment: C11orf54 | OMIM: 615810 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 28970 11 - 93762941 93763081 10 1 protein-coding 28970 11 + 93762664 93762731 1 1 protein-coding 224 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to DUF1907 (PF08925, IPR015021, SM01168) 283 98 248 2.1e-52 164.400 Domain of Unknown Function (DUF1907) Updated: 2019-02-21 Owner: ChiTaRS	C11orf54 A0A024R396 A0A024R3B0 A0A087WT99 E9PIP1 E9PJU8 E9PLB3 E9PLC5 E9PPB5 E9PQS1 E9PR95 E9PSC3 Q9H0W9 NM_001351989.1	18..158 100.0%	- 11	C11orf54 A0A024R396 A0A024R3B0 A0A087WT99 E9PIP1 E9PJU8 E9PLB3 E9PLC5 E9PPB5 E9PQS1 E9PR95 E9PSC3 Q9H0W9 NM_001351989.1	157..224 100.0%	+ 11	1 0 0	exon-exon

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