Result for the search of Gene Name/NCBI ID(s): 'Apoc1'

Total of fusion sequences: 8 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	SplGraphs BC021462 ANNOTATION OF CHIMERA FUSION GenBank ID: BC021462 FASTA UniProtKB: Q8VC84 Gcc1 protein Fusion Gene(s): Gcc1 Head Gene (1) Alignment: Gcc1 Tail Gene (2) Alignment: Apoc1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 74375 6 - 28420521 28421573 1 1 protein-coding 11812 7 - 19689481 19692000 2 1 protein-coding 1363 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Gcc1 E9Q6U7 F6VDD7 Q8VC84 Q9D4H2 NM_028900.4	12..1064 100.0%	- 6	Apoc1 A0A140LIY8 P34928 NM_001110009.2	1060..1328 100.0%	- 7	1 0 0	exon-exon
2 Mus musculus	AI786219 ANNOTATION OF CHIMERA FUSION GenBank ID: AI786219 FASTA Head Gene (1) Alignment: Apoc1 Tail Gene (2) Alignment: Aldh2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11812 7 + 19689484 19692012 2 1 protein-coding 11669 5 + 121572693 121572783 1 1 protein-coding 364 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Apoc1 A0A140LIY8 P34928 NM_001110009.2	1..278 99.7%	+ 7	Aldh2 A0A0G2JEU1 A0A0G2JF60 A0A0G2JFQ0 D3YYF3 P47738 Q3TVM2 Q3U6I3 Q3U9J7 Q3UJW1 Q544B1 NM_009656.4	274..364 100.0%	+ 5	1 0 0	exon-exon
3 Mus musculus	CA457209 ANNOTATION OF CHIMERA FUSION GenBank ID: CA457209 FASTA Head Gene (1) Alignment: Apoc1 Tail Gene (2) Alignment: B230219D22Rik Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11812 7 - 19689485 19692638 4 1 protein-coding 78521 13 + 55693955 55693980 0 0 1002 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Apoc1 A0A140LIY8 P34928 NM_001110009.2	38..443 100.0%	- 7	B230219D22Rik Q922W8 NM_181278.2	440..463 100.0%	+ 13	1 0 0	exon-intron
4 Mus musculus	DV049692 ANNOTATION OF CHIMERA FUSION GenBank ID: DV049692 FASTA Head Gene (1) Alignment: Malat1 Tail Gene (2) Alignment: Apoc1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 72289 19 - 5782576 5802671 1 1 ncRNA 11812 7 + 19690814 19690967 0 0 protein-coding 957 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Malat1 B0LAE7 NR_002847.2	35..781 99.8%	- 19	Apoc1 A0A140LIY8 P34928 NM_001110009.2	782..811 97.2%	+ 7	1 0 0	exon-intron
5 Mus musculus	CA457998 ANNOTATION OF CHIMERA FUSION GenBank ID: CA457998 FASTA Head Gene (1) Alignment: Apoc1 Tail Gene (2) Alignment: Fam129a Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11812 7 - 19689481 19692638 4 1 protein-coding 63913 1 - 151597986 151598009 0 0 837 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Apoc1 A0A140LIY8 P34928 NM_001110009.2	38..447 99.8%	- 7	Fam129a D3YYZ9 D3Z233 E9PYV4 Q3TDH5 Q3UW53 NM_022018.3	445..468 100.0%	- 1	1 0 0	exon-intron
6 Mus musculus	CA456448 ANNOTATION OF CHIMERA FUSION GenBank ID: CA456448 FASTA Head Gene (1) Alignment: Apoc1 Tail Gene (2) Alignment: Nckap5 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11812 7 - 19689485 19692638 4 1 protein-coding 210356 1 - 126043435 126043458 0 0 protein-coding 958 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Apoc1 A0A140LIY8 P34928 NM_001110009.2	38..444 99.6%	- 7	Nckap5 E0CYQ5 E0CYS4 E2QRQ1 E9Q3G9 E9QAE1 Q29SA9 Q6NZK2 Q8BZX2 Q8C6S8 Q8C9K4 XM_011247963.2	440..463 100.0%	- 1	1 0 0	exon-intron
7 Mus musculus	AW111329 ANNOTATION OF CHIMERA FUSION GenBank ID: AW111329 FASTA Head Gene (1) Alignment: Ppa1 Tail Gene (2) Alignment: Apoc1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 67895 10 - 61673903 61674165 1 1 protein-coding 11812 7 - 19689563 19692008 2 1 protein-coding 459 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Ppa1 Q3UA53 Q4FK49 Q8BTY3 Q9D819 NM_026438.4	1..263 100.0%	- 10	Apoc1 A0A140LIY8 P34928 NM_001110009.2	264..459 99.5%	- 7	1 0 0	exon-exon
8 Mus musculus	CA457391 ANNOTATION OF CHIMERA FUSION GenBank ID: CA457391 FASTA Head Gene (1) Alignment: Apoc1 Tail Gene (2) Alignment: Slco2a1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11812 7 - 19689181 19692638 4 1 protein-coding 24059 9 - 103062232 103062253 0 0 protein-coding 983 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Apoc1 A0A140LIY8 P34928 NM_001110009.2	38..482 97.6%	- 7	Slco2a1 Q3TED0 Q9CQU9 Q9EPT5 NM_033314.3	471..492 95.5%	- 9	1 0 0	exon-intron

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