Result for the search of Gene Name/NCBI ID(s): 'ATRN'

Total of fusion sequences: 5 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs AA452049 ANNOTATION OF CHIMERA FUSION GenBank ID: AA452049 FASTA Head Gene (1) Alignment: NET1 | OMIM: 606450 Tail Gene (2) Alignment: ATRN | OMIM: 603130 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10276 10 + 5446756 5452417 5 1 oncogene, protein-coding 8455 20 + 3648860 3649005 1 1 protein-coding 414 hg38 Updated: 2019-02-20 Owner: ChiTaRS	NET1 A0A2X0SFV4 Q5SQI5 Q5SQI6 Q5SQI7 Q7Z628 NM_001047160.2	1..271 100.0%	+ 10	ATRN O75882 NM_139321.2	269..414 100.0%	+ 20	1 0 0	exon-exon
2 Homo Sapiens	ChimerDB AI174699 ANNOTATION OF CHIMERA FUSION GenBank ID: AI174699 FASTA Head Gene (1) Alignment: ATRN | OMIM: 603130 Tail Gene (2) Alignment: PKD1P1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 8455 20 - 3483568 3483786 1 0 protein-coding 339044 16 + 16344114 16350151 4 1 pseudo 649 hg38 Updated: 2019-02-20 Owner: ChiTaRS	ATRN O75882 NM_139321.2	1..219 99.6%	- 20	PKD1P1 NR_036447.1	209..649 99.2%	+ 16	1 0 0	intron-exon
3 Homo Sapiens	BF475948 ANNOTATION OF CHIMERA FUSION GenBank ID: BF475948 FASTA Head Gene (1) Alignment: DPF3 | OMIM: 601672 Tail Gene (2) Alignment: ATRN | OMIM: 603130 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 8110 14 - 72873863 72874487 0 0 protein-coding 8455 20 - 3604089 3616064 2 1 protein-coding 413 hg38 Updated: 2019-06-06 Owner: ChiTaRS	DPF3 F8W7T1 Q92784 XM_017021670.2	1..237 96.7%	- 14	ATRN O75882 NM_139322.3	7..409 99.3%	- 20	1 0 0	intron-exon
4 Homo Sapiens	AA367938 ANNOTATION OF CHIMERA FUSION GenBank ID: AA367938 FASTA Head Gene (1) Alignment: ATRN | OMIM: 603130 Tail Gene (2) Alignment: GIGYF2 | OMIM: 612003 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 8455 20 - 3647583 3647725 29 1 protein-coding 26058 2 + 232790782 232791033 20 1 protein-coding 302 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Ribosomal_60s (PF00428, IPR001813) 88 90 125 0.0018 5.200 60s Acidic ribosomal protein EGF_2 (PF07974, IPR013111) 32 121 151 7.2e-07 15.900 EGF-like domain CUB (PF00431, IPR000859, SM00042) 110 154 267 7.6e-17 47.900 CUB domain Kelch_1 (PF01344, IPR006652, SM00612) 46 362 406 2.7e-09 22.800 Kelch motif Kelch_6 (PF13964) 50 413 462 2.4e-10 26.800 Kelch motif Kelch_3 (PF13415) 49 487 530 1e-05 12.100 Galactose oxidase, central domain Kelch_5 (PF13854) 42 522 563 3.6e-06 13.200 Kelch motif PSI (PF01437, IPR002165, SM00423) 51 669 718 3.1e-06 14.000 Plexin repeat Lectin_C (PF00059, IPR001304, SM00034) 108 827 942 1.8e-24 72.900 Lectin C-type domain Laminin_EGF (PF00053, IPR002049, SM00180) 49 1085 1128 1.9e-07 17.500 Laminin EGF domain TMEM100 (PF16311, IPR032536) 133 1284 1345 5.9e-06 12.100 Transmembrane protein 100 Updated: 2019-02-20 Owner: ChiTaRS	ATRN O75882 NM_139321.2	1..143 100.0%	- 20	GIGYF2 A0A024R4A5 A0A1U8QZH8 B8ZZD2 C9IYH5 C9J0V6 C9J1A6 C9J7G1 C9JC65 C9JH18 C9JH78 C9JHT0 C9JHW1 C9JPV7 C9JRZ2 C9JW88 C9JXQ0 C9JZC0 E7ESB6 F8WBF1 F8WCD5 I1E4Y6 Q6Y7W6 NM_015575.3	144..302 100.0%	+ 2	1 0 0	exon-exon
5 Homo Sapiens	EI783540 ANNOTATION OF CHIMERA FUSION GenBank ID: EI783540 FASTA Head Gene (1) Alignment: SMYD3 | OMIM: 608783 Tail Gene (2) Alignment: ATRN | OMIM: 603130 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 64754 1 + 246243818 246243972 0 0 oncogene, protein-coding 8455 20 - 3630914 3631089 0 0 protein-coding 631 hg38 Updated: 2019-04-05 Owner: ChiTaRS	SMYD3 A8MXR1 B0QZ88 B0QZ99 B0QZA0 B3KN46 L0R6Q4 Q3B7A0 Q9H7B4 XM_024449136.1	1..155 98.1%	+ 1	ATRN O75882 NM_139321.2	137..301 95.6%	- 20	1 0 0	intron-intron

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