Search Database Collection

Result for the search: Gene Name/NCBI ID(s): 'ARHGEF6'

Total of fusion sequences: 3 (from 393,531 parsed EST/mRNAs. Last update 2018-11-20)

Organism	Fusion: Graphical View, Annotation, PPI	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed, iHOP reference
		Name(s)1	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,17	8	9,10,11	12,25	13,14,15	16	17
Homo Sapiens	SplGraphs AA236755 ANNOTATION OF CHIMERA FUSION GenBank ID: AA236755 FASTA Head Gene (1) Alignment: CRLF3 | OMIM: 614853 Tail Gene (2) Alignment: ARHGEF6 | OMIM: 300267 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51379 17 - 29110610 29111031 NA NA protein-coding 9459 X - 135748485 135748568 NA NA oncogene, protein-coding NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to fn3 (PF00041, IPR003961, SM00060) 85 222 304 1.1e-07 18.500 Fibronectin type III domain Updated: 2012-12-12 Owner: ChiTaRS	CRLF3 J3KST8 J3QLS9 L8E8Q9 Q8IUI8	1..421 100.0%	- 17	ARHGEF6 Q15052	417..500 98.9%	- X	1 0 0
Homo Sapiens	ChimerDB AV727141 ANNOTATION OF CHIMERA FUSION GenBank ID: AV727141 FASTA Head Gene (1) Alignment: CRKL | OMIM: 602007 Tail Gene (2) Alignment: ARHGEF6 | OMIM: 300267 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1399 22 + 21304531 21304742 NA NA oncogene 9459 X - 135748285 135748568 NA NA oncogene, protein-coding NA hg19 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to SH2 (PF00017, IPR000980, SM00252) 77 183 257 3.2e-25 74.400 SH2 domain SH3_1 (PF00018, IPR001452, SM00326) 48 298 344 3e-20 57.900 SH3 domain SH3_2 (PF07653, IPR011511) 55 408 463 8.2e-16 43.800 Variant SH3 domain Updated: 2012-12-12 Owner: ChiTaRS	CRKL L8E7R7 P46109	1..214 98.2%	+ 22	ARHGEF6 Q15052	212..441 100.0%	- X	1 0 0
Homo Sapiens	DA993949 ANNOTATION OF CHIMERA FUSION GenBank ID: DA993949 FASTA Head Gene (1) Alignment: ARHGEF6 | OMIM: 300267 Tail Gene (2) Alignment: WDR33 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9459 X - 136743584 136780749 6 0 oncogene, protein-coding 55339 2 - 127801045 127801071 1 0 protein-coding 554 hg38 Updated: 2018-08-27 Owner: ChiTaRS	ARHGEF6 Q15052	1..530 99.9%	- X	WDR33 B9A053 C9J8B4 Q9C0J8	528..554 100.0%	- 2	1 0 0