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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'ANKRD12'

Total of fusion sequences: 16 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: CN266894 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: SMCHD1 | OMIM: 614982 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318+9136810918252021oncogene,
protein-coding		2334718+27036902705804371tumor suppressor,
protein-coding		 615 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Big_1 (PF02369, IPR003344, SM00634) 99 821 901 1.9e-05 10.900 Bacterial Ig-like domain (group 1)
DUF1664 (PF07889, IPR012458) 124 1162 1238 5.8e-05 9.300 Protein of unknown function (DUF1664)
SMC_hinge (PF06470, IPR010935, SM00968) 117 1268 1396 6.3e-17 48.300 SMC proteins Flexible Hinge Domain
Updated: 2019-02-21
Owner: ChiTaRS
XM_017025668.2		1..295
100.0%		+
18
XM_017025684.1		293..602
99.1%		+
18		1
0
0		exon-exon
2
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA634993 FASTA
Head Gene (1) Alignment: ANP32A | OMIM: 600832 Tail Gene (2) Alignment: ANKRD12 | OMIM: 610616 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
812515-687804206878458541oncogene,
tumor suppressor,
protein-coding		2325318+9256043925609651oncogene,
protein-coding		 389 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
LRR_9 (PF14580) 175 7 169 2e-21 62.400 Leucine-rich repeat
CENP-B_dimeris (PF09026, IPR015115) 100 297 345 0.061 0.100 Centromere protein B dimerisation domain
Agouti (PF05039, IPR007733, SM00792) 91 369 430 0.038 1.100 Agouti protein
PTPRCAP (PF15713, IPR016553) 148 941 1057 0.016 1.700 Protein tyrosine phosphatase receptor type C-associated
Updated: 2019-02-20
Owner: ChiTaRS
NM_006305.3		1..341
99.8%		-
15
XM_017025668.2		336..389
100.0%		+
18		1
0
0		exon-exon
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF747860 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: ANKRD12 | OMIM: 610616 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318-9208672920877151oncogene,
protein-coding		2325318+92087679221913101oncogene,
protein-coding		 561 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
DUF1777 (PF08648, IPR013957) 171 90 235 0.0039 3.600 Protein of unknown function (DUF1777)
Ank_2 (PF12796, IPR020683) 84 200 279 6.1e-17 48.400 Ankyrin repeats (3 copies)
Ank_4 (PF13637) 55 250 302 3e-09 23.700 Ankyrin repeats (many copies)
Ank_5 (PF13857) 56 268 322 4.9e-09 22.800 Ankyrin repeats (many copies)
CDK5_activator (PF03261, IPR004944) 363 353 563 0.0027 3.300 Cyclin-dependent kinase 5 activator protein
DUF2370 (PF10176, IPR019325) 226 742 852 0.027 0.200 Protein of unknown function (DUF2370)
DUF2956 (PF11169, IPR021339) 102 971 1032 0.043 0.300 Protein of unknown function (DUF2956)
UPF0767 (PF15990, IPR031933) 83 1165 1220 0.0038 3.700 UPF0767 family
GAGA_bind (PF06217, IPR010409) 295 1546 1836 0.039 0.300 GAGA binding protein-like family
Updated: 2019-02-22
Owner: ChiTaRS
XM_017025668.2		8..105
100.0%		-
18
XM_017025668.2		98..540
99.1%		+
18		0
39402
13245		exon-exon
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AU185692 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: ANKRD12 | OMIM: 610616 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318-9182378918251121oncogene,
protein-coding		2325318-9221917922199971oncogene,
protein-coding		 213 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
CDK5_activator (PF03261, IPR004944) 363 117 342 0.0037 2.900 Cyclin-dependent kinase 5 activator protein
DUF2370 (PF10176, IPR019325) 226 521 631 0.025 0.300 Protein of unknown function (DUF2370)
DUF2956 (PF11169, IPR021339) 102 750 812 0.038 0.500 Protein of unknown function (DUF2956)
UPF0767 (PF15990, IPR031933) 83 944 999 0.0032 3.900 UPF0767 family
GAGA_bind (PF06217, IPR010409) 295 1323 1617 0.036 0.400 GAGA binding protein-like family
Updated: 2019-02-20
Owner: ChiTaRS
XM_017025668.2		1..134
100.0%		-
18
XM_017025668.2		131..213
100.0%		-
18		0
39402
13245		exon-exon
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DL060466 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: ZBTB20 | OMIM: 606025 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318+92559709256119101oncogene,
protein-coding		261373+11472691411472694250protein-coding 199 hg38
Updated: 2019-01-29
Owner: ChiTaRS
XM_017025668.2		18..168
97.4%		+
18
NM_001348803.1		164..192
100.0%		+
3		1
0
0		exon-intron
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI733935 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: ZBTB20 | OMIM: 606025 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318+92559709256119101oncogene,
protein-coding		261373+11472691411472694250protein-coding 199 hg38
Updated: 2019-01-29
Owner: ChiTaRS
XM_017025668.2		18..168
97.4%		+
18
NM_001348803.1		164..192
100.0%		+
3		1
0
0		exon-intron
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DL059416 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: ZBTB20 | OMIM: 606025 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318+92559599256119101oncogene,
protein-coding		261373+11472691411472694250protein-coding 199 hg38
Updated: 2019-01-29
Owner: ChiTaRS
XM_017025668.2		6..168
95.7%		+
18
NM_001348803.1		164..192
100.0%		+
3		1
0
0		exon-intron
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI733997 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: PAX3 | OMIM: 606597 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318+92559709256119101oncogene,
protein-coding		50772+22223308222223311050oncogene,
protein-coding		 199 hg38
Updated: 2019-01-29
Owner: ChiTaRS
XM_017025668.2		18..167
100.0%		+
18
NM_013942.4		163..191
100.0%		+
2		1
0
0		exon-intron
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DL060506 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: PAX3 | OMIM: 606597 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318+92559709256119101oncogene,
protein-coding		50772+22223308222223311050oncogene,
protein-coding		 199 hg38
Updated: 2019-01-29
Owner: ChiTaRS
XM_017025668.2		18..167
100.0%		+
18
NM_013942.4		163..191
100.0%		+
2		1
0
0		exon-intron
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DL058910 FASTA
Head Gene (1) Alignment: ANKRD12 | OMIM: 610616 Tail Gene (2) Alignment: PAX3 | OMIM: 606597 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2325318+92559599256119101oncogene,
protein-coding		50772+22223308222223311050oncogene,
protein-coding		 199 hg38
Updated: 2019-01-29
Owner: ChiTaRS
XM_017025668.2		6..167
97.6%		+
18
NM_013942.4		163..191
100.0%		+
2		1
0
0		exon-intron

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