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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'ADAM9'

Total of fusion sequences: 13 (from 12,143,238 parsed EST/mRNAs. Last update: 2021-04-05 16:54:11)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BU686080 FASTA
Head Gene (1) Alignment: ADAM9 | OMIM: 602713 Tail Gene (2) Alignment: ADAM9 | OMIM: 602713 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
87548-3910452239104999231oncogene,
protein-coding		87548+391041463910424611oncogene,
protein-coding		 592 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Pep_M12B_propep (PF01562, IPR002870) 140 61 189 3e-35 107.700 Reprolysin family propeptide
Reprolysin (PF01421, IPR001590) 199 238 432 3.5e-74 235.200 Reprolysin (M12B) family zinc metalloprotease
Disintegrin (PF00200, IPR001762, SM00050) 76 449 522 3.8e-23 68.500 Disintegrin
ADAM_CR (PF08516, IPR006586, SM00608) 113 527 641 3.8e-37 113.500 ADAM cysteine-rich
Updated: 2019-02-21
Owner: ChiTaRS
XR_001745616.2		19..495
99.6%		-
8
XR_001745616.2		492..592
99.1%		+
8		1
0
0		exon-exon

Hi-C contacts of chimeric junction

Fusion Gene1 chromo-
some1		 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo-
some2		 junction start2 junction end2 Hi-C point2 Δ2 Cell lines
(Cell_ID,)		 PubMed(,s)
2319--32-825--33-34-
BU686080 ADAM9 8 39104996 39104999 39102481 2515 ADAM9 8 39104146 39104149 39102481 1665 K-562 (CVCL_0004) 25497547
2
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: U41766 FASTA
UniProtKB: Q13443 Disintegrin and metalloproteinase domain-containing protein 9 (ADAM 9) (EC 3.4.24.-) (Cellular disintegrin-related protein) (Meltrin-gamma) (Metalloprotease/disintegrin/cysteine-rich protein 9) (Myeloma cell metalloproteinase)
Fusion Gene(s): ADAM9 KIAA0021 MCMP MDC9 MLTNG
Head Gene (1) Alignment: ADAM9 | OMIM: 602713 Tail Gene (2) Alignment: WASF3 | OMIM: 605068 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
87548+3899698639105001231oncogene,
protein-coding		1081013-266692072666923300protein-coding 3865 hg38
Updated: 2019-03-31
Owner: ChiTaRS
XR_001745616.2		1..3839
100.0%		+
8
NM_006646.5		3836..3862
100.0%		-
13		1
0
0		exon-intron
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: CF122513 FASTA
Head Gene (1) Alignment: RPS27 | OMIM: 603702 Tail Gene (2) Alignment: ADAM9 | OMIM: 602713 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
62321+15399076215399215051protein-coding87548-390134913901376800oncogene,
protein-coding		 451 hg38
Updated: 2019-04-13
Owner: ChiTaRS
NM_001349946.1		39..385
100.0%		+
1
XR_001745616.2		372..406
100.0%		-
8		1
0
0		exon-intron
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: CB048085 FASTA
Head Gene (1) Alignment: TIPARP-AS1 Tail Gene (2) Alignment: ADAM9 | OMIM: 602713 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1002872273-15667192315667437811ncRNA87548-390508263905085800oncogene,
protein-coding		 423 hg38
Updated: 2019-04-13
Owner: ChiTaRS
TIPARP-AS1
NR_027954.1		16..395
99.8%		-
3
XR_001745616.2		391..423
100.0%		-
8		1
0
0		exon-intron
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF826309 FASTA
Head Gene (1) Alignment: EPCAM | OMIM: 185535 Tail Gene (2) Alignment: ADAM9 | OMIM: 602713 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
40722+473865994738687591oncogene,
protein-coding		87548+3900084939001127220oncogene,
protein-coding		 553 hg38
Updated: 2019-02-20
Owner: ChiTaRS
NM_002354.2		10..284
99.7%		+
2
XR_001745616.2		275..553
98.6%		+
8		1
0
0		exon-intron
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: CF122506 FASTA
Head Gene (1) Alignment: ADAM9 | OMIM: 602713 Tail Gene (2) Alignment: PTPRH | OMIM: 602510 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
87548-390134913901351900oncogene,
protein-coding		579419+551873455518770110oncogene,
protein-coding		 138 hg38
Updated: 2019-04-13
Owner: ChiTaRS
XR_001745616.2		70..94
100.0%		-
8		 PTPRH
Q9HD43
XM_011527183.1		81..138
96.6%		+
19		1
0
0		intron-intron
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: FN169707 FASTA
Head Gene (1) Alignment: ADAM9 | OMIM: 602713 Tail Gene (2) Alignment: UACA | OMIM: 612516 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
87548+390114083901143120oncogene,
protein-coding		5507515-7066926970669353161protein-coding 102 hg38
Updated: 2019-02-08
Owner: ChiTaRS
XR_001745616.2		4..27
100.0%		+
8
NM_001008224.2		18..102
97.7%		-
15		1
0
0		intron-exon
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: CB048519 FASTA
Head Gene (1) Alignment: ADAM9 | OMIM: 602713 Tail Gene (2) Alignment: CHD9 | OMIM: 616936 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
87548+390508263905085400oncogene,
protein-coding		8020516-533265685332689411oncogene,
protein-coding		 340 hg38
Updated: 2019-04-13
Owner: ChiTaRS
XR_001745616.2		1..29
100.0%		+
8
XR_001751995.2		8..332
100.0%		-
16		1
0
0		intron-exon
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA166816 FASTA
Head Gene (1) Alignment: ADAM9 | OMIM: 602713 Tail Gene (2) Alignment: PRPF6 | OMIM: 613979 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
87548-3910477139105001231oncogene,
protein-coding		2414820+6398890863989043180protein-coding 366 hg38
Updated: 2019-01-31
Owner: ChiTaRS
XR_001745616.2		4..234
100.0%		-
8		 PRPF6
O94906
NM_012469.3		232..366
100.0%		+
20		1
0
0		exon-intron
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: CB048002 FASTA
Head Gene (1) Alignment: ADAM9 | OMIM: 602713 Tail Gene (2) Alignment: ELOVL5 | OMIM: 611805 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
87548+390508263905086000oncogene,
protein-coding		604816+532674045326791511oncogene,
protein-coding		 548 hg38
Updated: 2019-04-13
Owner: ChiTaRS
XR_001745616.2		1..33
100.0%		+
8
NM_001242828.1		28..539
100.0%		+
6		1
0
0		intron-exon

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