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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): '1408,1408'

Total of fusion sequences: 3 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: W26687 FASTA
Head Gene (1) Alignment: CRY2 | OMIM: 603732 Tail Gene (2) Alignment: CRY2 | OMIM: 603732 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
140811-4588108645881153121protein-coding140811+458815664588193411protein-coding 572 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
DNA_photolyase (PF00875, IPR006050) 164 52 215 2.8e-51 159.900 DNA photolyase
FAD_binding_7 (PF03441, IPR005101) 189 333 533 1.1e-71 226.500 FAD binding domain of DNA photolyase
Updated: 2019-02-21
Owner: ChiTaRS
NM_001127457.2		14..81
97.1%		-
11
NM_001127457.2		80..449
98.1%		+
11		0
8935
10705		exon-exon
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW858937 FASTA
Head Gene (1) Alignment: CRY2 | OMIM: 603732 Tail Gene (2) Alignment: CRY2 | OMIM: 603732 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
140811-458672594586782760protein-coding140811-458727294587280310protein-coding 652 hg38
Updated: 2019-02-20
Owner: ChiTaRS
NM_001127457.2		13..584
97.9%		-
11
NM_001127457.2		580..652
100.0%		-
11		0
4391
1868		intron-intron
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BI004402 FASTA
Head Gene (1) Alignment: CRY2 | OMIM: 603732 Tail Gene (2) Alignment: CRY2 | OMIM: 603732 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
140811+4587086145872171111protein-coding140811-458721574587221821protein-coding 206 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
DNA_photolyase (PF00875, IPR006050) 164 45 208 9.3e-52 161.500 DNA photolyase
FAD_binding_7 (PF03441, IPR005101) 189 326 526 3.2e-72 228.200 FAD binding domain of DNA photolyase
Updated: 2019-02-21
Owner: ChiTaRS
NM_001127457.2		1..147
100.0%		+
11
NM_001127457.2		145..206
100.0%		-
11		0
4391
1868		exon-exon

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