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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'UPF3A'

Total of fusion sequences: 8 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
ChimerDB CFAP53
Q96M91

NM_145020.4
1..171
99.5%
-
18

NM_023011.3
162..639
100.0%
+
13
1
0
0
exon-exon
2
Homo Sapiens

XM_006719803.3
1..439
95.9%
+
13

NM_001353645.1
6..452
96.2%
-
13
3
5
92
intron-exon
3
Homo Sapiens

XM_006719803.3
5..443
99.4%
+
13

NM_001353645.1
13..699
100.0%
-
13
3
0
158
intron-exon
4
Homo Sapiens

XM_006719803.3
5..441
99.4%
+
13

NM_001353645.1
13..539
100.0%
-
13
3
0
158
intron-exon
5
Homo Sapiens

NM_001353645.1
1..92
100.0%
-
13

NM_001302350.1
79..122
97.4%
-
7
1
0
0
exon-intron
6
Homo Sapiens

XM_017028363.1
1..160
97.3%
-
21

NM_001353652.1
7..168
98.8%
+
13
1
0
0
intron-exon
7
Homo Sapiens

XM_011534846.1
24..219
99.5%
-
13
JAKMIP3
Q5VZ66

NM_001105521.3
216..363
99.4%
-
10
1
0
0
exon-exon
8
Homo Sapiens

XM_011534846.1
2..358
99.5%
+
13

XM_024448312.1
357..409
100.0%
+
11
1
0
0
intron-exon

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