Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'SFTPB'

Total of fusion sequences: 10 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo Sapiens ChimerDB
NM_003991.3
1..1784
99.8%
-
13

NM_000542.3
1777..1934
100.0%
-
2
1
0
0
exon-exon
Homo Sapiens
NM_000542.3
18..352
100.0%
+
2
TRNE 348..415
98.6%
+
MT
1
0
0
exon-intron
Homo Sapiens
NM_000542.3
1..342
99.5%
-
2

NM_001005474.2
339..471
99.3%
+
3
1
0
0
intron-intron
Homo Sapiens
XM_011537574.2
12..170
100.0%
+
5

NM_000542.3
157..240
98.9%
-
2
1
0
0
intron-exon
Homo Sapiens
NM_000542.3
47..155
100.0%
-
2

NM_000542.3
154..240
100.0%
+
2
0
1879
2803
intron-exon
Homo Sapiens
NM_000542.3
1..279
100.0%
+
2

NM_000542.3
273..392
96.1%
-
2
0
1879
2803
intron-intron
Homo Sapiens
XM_005250043.4
1..483
99.8%
-
7

NM_000542.3
477..865
99.5%
-
2
1
0
0
exon-exon
Homo Sapiens
NM_000542.3
19..121
99.1%
+
2

NM_001199856.1
110..266
100.0%
-
9
1
0
0
intron-exon
Homo Sapiens
NM_000542.3
18..627
100.0%
+
2

NM_152321.3
623..702
97.5%
-
12
1
0
0
exon-exon
Homo Sapiens
NM_000542.3
1..481
100.0%
-
2

NM_001286272.1
482..754
99.7%
+
13
1
0
0
exon-intron

T o p