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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'CCDC88C'

Total of fusion sequences: 9 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Homo SapiensSplGraphs HSPA13
P48723

NM_006948.4
1..62
100.0%
-
21

XM_011536796.2
61..804
99.0%
-
14
0
0
1929
exon-exon
Homo SapiensSplGraphs
XR_429316.4
1..58
100.0%
-
14

NM_001008529.2
56..791
98.6%
-
17
1
0
0
exon-exon
Homo SapiensSplGraphs
NM_001323679.1
2..138
100.0%
+
20

XM_011536796.2
135..5400
99.9%
-
14
1
0
0
exon-exon
Homo Sapiens ChimerDB
XR_429316.4
2..63
95.1%
-
14

NM_001008529.2
61..793
99.2%
-
17
1
0
0
exon-exon
Homo Sapiens ChimerDB
XR_429316.4
60..102
97.7%
-
14

NM_001008529.2
100..764
95.3%
-
17
1
0
0
exon-exon
Homo Sapiens HSPA13
P48723

NM_006948.4
1..62
100.0%
-
21

XM_011536796.2
61..2730
99.9%
-
14
0
0
1929
exon-exon
Homo Sapiens
NM_005507.2
27..445
99.8%
+
11

XR_429316.4
439..655
97.7%
+
14
1
0
0
exon-exon
Homo Sapiens
XR_429316.4
7..222
99.1%
-
14

ENST00000400613
142..226
96.5%
+
9
1
0
0
intron-intron
Homo Sapiens
XR_429316.4
1..222
98.7%
-
14
LOC101929260
NR_110241.1
201..333
96.3%
-
2
1
0
0
intron-intron

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